Watch Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics Video Tutorial


Tutorial Details & Info

Tutorial Title: Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics
Instructor / Channel: Alex Soupir
Lesson Runtime: 14:30 Minutes
Publish Date: September 19, 2023
Total Students / Views: 9,205 views

Watch and learn Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics presented by Alex Soupir. This full video course has a total duration of 14:30 minutes with crystal clear HD video and audio quality. Access this full online lesson on any desktop PC, Mac, tablet, or smartphone.

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Course Description & Lesson Notes

Official Video Description:

Hello, all. Today I thought to kick off a new series of spatial transcriptomics analyses. This first video covers the what spatial transcriptomics is from the stand point you know about bulk RNA-seq, as well as some of the information that you can get from spatial transcriptomics like immune composition. In future videos we are going to analyze the data Nanostring provides for their new 6000-plex Spatial Molecular Imager platform: Human Frontal Cortex. In future videos, we will phenotype the cells in the dataset and use them to explore the spatial landscape of the data. This data can be acquired here: https://nanostring.com/products/cosmx-spatial-molecular-imager/human-frontal-cortex-ffpe-dataset/ Please consider contributing to my Patreon where I may do merch, gather ideas for future content, and have further discussions: https://www.patreon.com/AlexSoupir

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Learn how to understand Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics with this complete video tutorial guide. In this detailed walkthrough, you will learn essential skills for Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics.

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🎓 Lesson Overview & Learning Outcomes:

Welcome to the step-by-step video guide for Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics taught by Alex Soupir. This tutorial provides a comprehensive walkthrough designed to take you from foundational principles to practical implementation.

💡 Key Topics Covered in This Course:

  • Core Fundamentals & Setup: Understanding the workspace, essential tools, and initial setup for Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics.
  • Step-by-Step Practical Demonstration: Hands-on implementation guided by Alex Soupir with real-world examples.
  • Best Practices & Key Shortcuts: Time-saving workflows, keyboard shortcuts, and industry-standard recommendations.
  • Troubleshooting & Common Pitfalls: How to avoid common beginner errors and optimize your workflow for peak efficiency.

📋 Recommended Prerequisites & Study Notes:

No prior advanced experience is required. Follow along with the video player above on any desktop computer, tablet, or mobile device. Pause and rewind at key steps to practice along with the instructor.

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